1.24.1 Opening the Alignment Settings Dialog

Step 1 - Load Template Sequence

In order to align sequences, it is first necessary to open the project in Genome Compiler which contains the template sequence.

Step 2 - Opening the Alignment Settings Dialog

You then need to open the Alignment Settings Dialog in order to upload your alignment files.

This Settings dialog can be accessed either from:

• The menu bar, by selecting "Tools", and then "QC Alignment" (Figure 1.24.1.1).

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  Figure 1.24.1.1: Click Tools and then QC Alignment to open the Settings Dialog.

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• From the Annotation Layers menu at the bottom right panel of the opened project and selecting the "QC alignment" settings icon (Figure 1.24.1.2).

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  Figure 1.24.1.2: Click Annotation Layers and then QC Alignment Settings.

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• Or by selecting the "Align" icon in the toolbar (Figure 1.24.1.3).

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  Figure 1.24.1.3: Toolbar: "Align" icon to open Alignment Settings.

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