3.3.16 BLAST sequences At NCBI

  • For blusting a sequence through NCBI in ApE you should go to “Tools”-”BLAST sequences At NCBI” from the main menu (Figure 3.3.16.1). This will open the “BLAST DNA at NCBI” dialog whereby you can determine the appropriate parameters.


    Figure 3.3.16.1: BLAST sequences At NCBI in ApE.

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  • In Genome Compiler you should select your sequence and either right click (Figure 3.3.16.2) or go to “Tools”-”Blast” (Figure 3.3.16.3) to select the appropriate NCBI blast program. This will lead you to the online NCBI search whereby your query sequence will appear and you’ll be able to change the search parameters.


    Figure 3.3.16.2: BLAST sequences At NCBI using right click in Genome Compiler.

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    Figure 3.3.16.3: BLAST sequences At NCBI from the main menu in Genome Compiler.

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